gnomAD MCP Server

Created By

Masaru Koido8 months ago

This MCP server provides a programmatic interface to the Genome Aggregation Database (gnomAD) API, supporting multiple API versions (v2.1.1, v3.1.2, v4.1.0). It abstracts version-specific field and schema differences, exposing a unified API for downstream tools and users.

# bioinformatics

# gnomad

Overview Content Tools Comments

Overview

What is gnomAD MCP Server?

The gnomAD MCP Server provides a programmatic interface to the Genome Aggregation Database (gnomAD) API, supporting multiple API versions (v2.1.1, v3.1.2, v4.1.0). It abstracts version-specific field and schema differences, exposing a unified API for downstream tools and users.

How to use gnomAD MCP Server?

To use the gnomAD MCP Server, clone the repository, install the dependencies, activate the virtual environment, and run the server using the provided command. You can then query the API for genomic data.

Key features of gnomAD MCP Server?

Supports multiple versions of the gnomAD API.
Unified API interface for easier access to genomic data.
Detailed documentation for queries and API design.

Use cases of gnomAD MCP Server?

Accessing gene metadata and constraint metrics.
Retrieving variant information for genomic regions.
Integrating with other bioinformatics tools for data analysis.

FAQ from gnomAD MCP Server?

What versions of the gnomAD API are supported?

The server supports v2.1.1, v3.1.2, and v4.1.0 of the gnomAD API.

How do I install the gnomAD MCP Server?

Clone the repository, install dependencies, activate the virtual environment, and run the server as per the instructions in the README.

Is there any documentation available?

Yes, detailed documentation is provided in the README files.

Server Config

{
  "mcpServers": {
    "gnomad": {
      "command": "uv",
      "args": [
        "--directory",
        "where you cloned the repo",
        "run",
        "server.py"
      ],
      "env": {}
    }
  }
}

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